annotate_mouse_genes: Annotate with genes

Description Usage Arguments Value Examples

View source: R/annotation.R

Description

Request mouse genes from Ensembl Biomart.

Usage

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annotate_mouse_genes(geno, flanking = NULL)

Arguments

geno

Data frame or GenomicRanges::GRanges object including columns chr, pos.

flanking

Size of flanking sequence to be included.

Value

Data frame.

Examples

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geno = finemap("chr1",
  start = 5000000, end = 6000000,
  strain1 = c("C57BL_6J"), strain2 = c("AKR_J", "A_J", "BALB_cJ")
)

genes = annotate_mouse_genes(geno, 50000)

matmu/mmus documentation built on Nov. 14, 2021, 1:18 a.m.