finemap_query: Finemap query builder

Description Usage Arguments Value

View source: R/make_query.R

Description

Finemap query builder

Usage

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finemap_query(
  chr,
  start = NULL,
  end = NULL,
  strain1 = NULL,
  strain2 = NULL,
  consequence = NULL,
  impact = NULL,
  thr1 = 0,
  thr2 = 0
)

Arguments

chr

Vector of chromosome names.

start

Optional vector of chromosomal start positions of target regions (GRCm38).

end

Optional vector of chromosomal end positions of target regions (GRCm38).

strain1

First strain set with strains from avail_strains().

strain2

Second strain set with strains from avail_strains().

consequence

Optional vector of consequence types.

impact

Optional vector of impact types.

thr1

Number discordant strains in strain1. Between 0 and length(strain1)-1. 0 by default.

thr2

Number discordant strains in strain2. Between 0 and length(strain2)-1. 0 by default.

Value

Query string.


matmu/mmus documentation built on Nov. 14, 2021, 1:18 a.m.