README.md

In maxconway/metabex: Metabolic Model Explorer

metabex

This package is for Cytoscape-based analysis of populations of metabolic models, and their properties. The key datatype is a data.frame, with some columns prefixed with genotype. and some with phenotype. Various graphs can be plotted to identify genes or reactions with unusual properties, and, once these properties are found, a suitable sybil model can be displayed in cytoscape and subsets of the metabolic network visualized.

Installation

metabex is not yet available on CRAN. You can install the development version directly from github with:

if (packageVersion("devtools") < 1.6) {
  install.packages("devtools")
}
devtools::install_github("maxconway/metabex")

Usage

For usage, see vignette('Introduction', package='metabex')

maxconway/metabex documentation built on May 21, 2019, 1:39 p.m.