show_gene_expression: Plot gene expressions in cytoscape
In maxconway/metabex: Metabolic Model Explorer

Description Usage Arguments Value

View source: R/interactive_scatterplot.R

Given a gene expressions, plot the associated reaction activities to cytoscape. This function is a wrapper around show_reaction_activities and gene2rxn

1	show_gene_expression(model, expressions, cw, attribute = "activity")

`model`	a sybil model with valid `react_id`s
`expressions`	a vector of gene expression values, length equal to `length(model@allGenes)`
`cw`	a cytoscape window
`attribute`	the cytoscape attribute to be set

silently returns the activities of the reactions as a named vector, but mainly used for the side effect of setting the 'activity' attribute in cytoscape.

maxconway/metabex documentation built on May 21, 2019, 1:39 p.m.