Calculate the CAI for each gene
1 2 | getCAIs(DNA, anngenes,
referenceGenes = anngenes@elementMetadata@listData$locus)
|
DNA |
a DNAString object, giving the whole genome |
anngenes |
a GRanges object, detailing how genes match to the genome |
referenceGenes |
the genes selected as being highly expressed enough to form a reference set |
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