BinaryMatrix: BinaryMatrix

Description Usage Arguments Value Author(s) Examples

View source: R/Binary_matrix.R

Description

BinaryMatrix takes the file 'Good_Predictors' created by Predictive_Power function and creates a list of files containing the final signature, the two lists of peculiar genes for the two classes.

Usage

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BinaryMatrix(binary_matrix_file, thr_low, thr_high, classification_vector_file)

Arguments

binary_matrix_file

the 'Good_Predictors' file created by Predictive_Power function

thr_low

The threshold identifying the most misclassified subjects in class 0

thr_high

The threshold identifying the most misclassified subjects in class 1

classification_vector_file

A file containing the true classification labels of the samples

Value

BinaryMatrix creates three files: - 'Final_Signature' containing all the peculiar genes - 'Signature_High' containing the list of peculiar genes for class 1 - 'Signature_Low' containing the list of peculiar genes for class 0.

Author(s)

Federica Martina

Examples

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## The function is currently defined as
BinaryMatrix('Good_Predictors', 20, 165, 'classification_vector')

mbeccuti/PGS documentation built on June 6, 2017, 9:21 a.m.