BinaryMatrix: BinaryMatrix
In mbeccuti/PGS: PGS-Peculiar Genes Selection: a feature selection procedure for binary classification tasks.
Description
Usage
Arguments
Value
Author(s)
Examples
Description
BinaryMatrix takes the file 'Good_Predictors' created by Predictive_Power function and creates a list of files containing the final signature, the two lists of peculiar genes for the two classes.
Usage
1
BinaryMatrix(binary_matrix_file, thr_low, thr_high, classification_vector_file)
Arguments
binary_matrix_file
the 'Good_Predictors' file created by Predictive_Power function
thr_low
The threshold identifying the most misclassified subjects in class 0
thr_high
The threshold identifying the most misclassified subjects in class 1
classification_vector_file
A file containing the true classification labels of the samples
Value
BinaryMatrix creates three files:
- 'Final_Signature' containing all the peculiar genes
- 'Signature_High' containing the list of peculiar genes for class 1
- 'Signature_Low' containing the list of peculiar genes for class 0.
Author(s)
Federica Martina
Examples
1
2
## The function is currently defined as
BinaryMatrix('Good_Predictors', 20, 165, 'classification_vector')
mbeccuti/PGS documentation built on May 23, 2019, 9:34 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
BinaryMatrix takes the file 'Good_Predictors' created by Predictive_Power function and creates a list of files containing the final signature, the two lists of peculiar genes for the two classes.
Usage
1 | BinaryMatrix(binary_matrix_file, thr_low, thr_high, classification_vector_file)
|
Arguments
binary_matrix_file |
the 'Good_Predictors' file created by Predictive_Power function |
thr_low |
The threshold identifying the most misclassified subjects in class 0 |
thr_high |
The threshold identifying the most misclassified subjects in class 1 |
classification_vector_file |
A file containing the true classification labels of the samples |
Value
BinaryMatrix creates three files: - 'Final_Signature' containing all the peculiar genes - 'Signature_High' containing the list of peculiar genes for class 1 - 'Signature_Low' containing the list of peculiar genes for class 0.
Author(s)
Federica Martina
Examples
1 2 | ## The function is currently defined as
BinaryMatrix('Good_Predictors', 20, 165, 'classification_vector')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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