DEG_detection uses 'limma' package to detect differentially expressed genes. It creates a matrix containing all the DEG detected in the gene expression data set in input using the contrast file.
Gene expression matrix
DEG_detection returns DEGs_file, containing the gene expression of the DEG detected by 'limma' package.
The function also displays the number of DEGs detected.
Ritchie ME, Phipson B, Wu D, Hu Y, Law CW, Shi W and Smyth GK (2015). “limma powers differential expression analyses for RNA-sequencing and microarray studies.” Nucleic Acids Research, 43(7), pp. e47.
## The function is currently defined as DEG_detection('Matrix_Genes', 'contrast_file')
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