rgraph6-package: rgraph6: Representing Graphs as 'graph6', 'digraph6' or...

In mbojan/rgraph6: Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings

rgraph6: Representing Graphs as 'graph6', 'digraph6' or 'sparse6' Strings

Description

Encode network data as strings of printable ASCII characters. Implemented functions include encoding and decoding adjacency matrices, edgelists, igraph, and network objects to/from formats 'graph6', 'sparse6', and 'digraph6'. The formats and methods are described in McKay, B.D. and Piperno, A (2014) \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.jsc.2013.09.003")}.

Details

Formats 'graph6', 'sparse6' and 'digraph6' represent graphs as strings of printable ASCII characters. The formats are due to Brendan McKay who implemented them in his program Nauty (McKay 1978, 1980, 2003, McKay & Piperno 2014), and are described in detail here. Package rgraph6 is a native R implementation of these formats.

The main functions are as_graph6(), as_digraph6(), as_sparse6() for encoding network data and igraph_from_text() and network_from_text() for decoding. There are also other low-level functions to decode directly from digraph6, graph6, and sparse6.

Citation

When using this package please cite it by referring to the following publications: McKay B, Piperno A (2014). "Practical graph isomorphism, II." Journal of Symbolic Computation, 60, 94-112.

Bojanowski M, Schoch D (2021). rgraph6: Representing Graphs as graph6, dgraph6 or sparse6 Strings. R package version: 2.0-0, https://mbojan.github.io/rgraph6/.

Call citation(package="rgraph6") for more details and the BibTeX entry.

Author(s)

Maintainer: Michal Bojanowski [e-mail] (ORCID) (Kozminski University)

Authors:

• David Schoch [e-mail] (ORCID)

References

McKay, B. D. (1978) Computing automorphisms and canonical labellings of graphs Combinatorial Mathematics, Lect. Notes Math., vol. 686, Springer-Verlag, Berlin, pp. 223-232 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1007/BFb0062536")}

McKay, B. D. (1981). Practical graph isomorphism. Congressus Numerantium, 30, pp. 45-87

McKay, B. D. (2003). "Nauty" User’s Guide (version 2.2) (p. 112). Technical Report TR-CS-9002, Australian National University.

McKay, B. D., & Piperno, A. (2013). Nauty and Traces user’s guide (Version 2.5). Computer Science Department, Australian National University, Canberra, Australia.

McKay, B. D., & Piperno, A. (2014). Practical graph isomorphism, II. Journal of symbolic computation, 60, 94-112. \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1016/j.jsc.2013.09.003")}

See Also

Useful links:

• https://mbojan.github.io/rgraph6/

• Report bugs at https://github.com/mbojan/rgraph6/issues

mbojan/rgraph6 documentation built on Sept. 25, 2024, 2:14 a.m.