Man pages for mbyvcm/MRCIEUGTEx
Functions for the analysis of GTEx data
| available_tissues | Returns list of tissues in GTEX available for analysis. |
| calculate_prs_gtex | harmonise GTEx and query data and calculate polygenic risk... |
| distanceByPRS | Plot distances between transcript profiles |
| distanceByPRS2 | Plot distances between transcript profiles from unlisted |
| extract_query_snps_gtex | Given a set of dbSNP rsids, get genome coordinates (hg19) and... |
| extract_top_hits | Returns transcripts surpassing given FDR threshold in each... |
| generateSetListGO | Generate GO object |
| get_query_snps_mrbase | generate set of "query" snps using MRBase |
| run_eqtl | Run linear models |
| runPathwayAnalysis | Run Pathways Analysis |
| volcanoeplot | Render volcanoe plot for each element in output list. |
