extract_query_snps_gtex: Given a set of dbSNP rsids, get genome coordinates (hg19) and...
In mbyvcm/MRCIEUGTEx: Functions for the analysis of GTEx data
Description
Usage
Arguments
Value
Description
Given a set of dbSNP rsids, get genome coordinates (hg19) and extract these ranges from GTEx VCF
Usage
1
extract_query_snps_gtex(query_data_frame, gtex_vcf_dir)
Arguments
query_data_frame
Data.frame with four columns: 'SNP','effect_allele','other_allele','beta'.
gtex_vcf_dif
Path to GTEx VCF file.
Value
Data.frame: GTEx alleles matching query.
mbyvcm/MRCIEUGTEx documentation built on May 22, 2019, 12:58 p.m.
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Description Usage Arguments Value
Description
Given a set of dbSNP rsids, get genome coordinates (hg19) and extract these ranges from GTEx VCF
Usage
1 | extract_query_snps_gtex(query_data_frame, gtex_vcf_dir)
|
Arguments
query_data_frame |
Data.frame with four columns: 'SNP','effect_allele','other_allele','beta'. |
gtex_vcf_dif |
Path to GTEx VCF file. |
Value
Data.frame: GTEx alleles matching query.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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