ps_plaque_16S: (Data) 60 Gingival Plaque samples of 16S rRNA (HMP 2012)
In mcalgaro93/benchdamic: Benchmark of differential abundance methods on microbiome data
ps_plaque_16S R Documentation
(Data) 60 Gingival Plaque samples of 16S rRNA (HMP 2012)
Description
A demonstrative purpose dataset containing microbial abundances
for a total of 88 OTUs. The 60 Gingival Plaque paired samples belong to the
Human Microbiome Project. This particular subset contains 30 Supragingival
and 30 Subgingival Plaque samples from the SEX = "Male",
RUN_CENTER = "WUCG", and VISITNO = "1" samples. It is possible
to obtain the same dataset after basic filters (remove taxa with zero counts)
and collapsing the counts to the genus level; HMP16SData Bioconductor
package was used to download the data.
Usage
data(ps_plaque_16S)
Format
An object of class phyloseq
mcalgaro93/benchdamic documentation built on Sept. 26, 2024, 6:34 p.m.
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| ps_plaque_16S | R Documentation |
(Data) 60 Gingival Plaque samples of 16S rRNA (HMP 2012)
Description
A demonstrative purpose dataset containing microbial abundances
for a total of 88 OTUs. The 60 Gingival Plaque paired samples belong to the
Human Microbiome Project. This particular subset contains 30 Supragingival
and 30 Subgingival Plaque samples from the SEX = "Male",
RUN_CENTER = "WUCG", and VISITNO = "1" samples. It is possible
to obtain the same dataset after basic filters (remove taxa with zero counts)
and collapsing the counts to the genus level; HMP16SData Bioconductor
package was used to download the data.
Usage
data(ps_plaque_16S)
Format
An object of class phyloseq
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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