R/ps_stool_16S.R

In mcalgaro93/benchdamic: Benchmark of differential abundance methods on microbiome data

#' @title (Data) 33 Stool samples of 16S rRNA (HMP 2012)
#'
#' @description A demonstrative purpose dataset containing microbial abundances
#' for a total of 71 OTUs. The 32 Stool samples belong to the Human Microbiome
#' Project. This particular subset contains the \code{SEX = "Male"},
#' \code{RUN_CENTER = "BI"}, and \code{VISITNO = "1"} samples. It is possible to
#' obtain the same dataset after basic filters (remove taxa with zero counts)
#' and collapsing the counts to the genus level; \code{HMP16Data} Bioconductor
#' package was used to download the data.
#'
#' @docType data
#' @aliases ps_stool_16S
#'
#' @usage data(ps_stool_16S)
#'
#' @format An object of class \code{phyloseq}
"ps_stool_16S"