actor: Create actor Object
In mccabes292/actor: A latent dirichlet model to Compare expressed isoform proportions TO a Reference panel
Description
Usage
Arguments
Value
View source: R/makeActorObject.R
Description
To scale and flip contributions from a cross validation multi-omics analysis in order to be align with the contributions from the full analysis.
Usage
1
2
Arguments
countData
Sample isoform data. First column should be titled "gene_id" and second "feature_id"
reduceTissue
TRUE or FALSE indicating whether or not the model should reduce to the top 5 tissues.
tissueList
List of tissues that will be used for fitting the model. If left NULL all tissues will be used.
refPanel
Reference panel user can add. Default is GTEx which is provided internally.
Value
directorObj - Object to be used for model fitting
mccabes292/actor documentation built on March 1, 2020, 1:23 a.m.
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Description Usage Arguments Value
View source: R/makeActorObject.R
Description
To scale and flip contributions from a cross validation multi-omics analysis in order to be align with the contributions from the full analysis.
Usage
1 2 |
Arguments
countData |
Sample isoform data. First column should be titled "gene_id" and second "feature_id" |
reduceTissue |
TRUE or FALSE indicating whether or not the model should reduce to the top 5 tissues. |
tissueList |
List of tissues that will be used for fitting the model. If left NULL all tissues will be used. |
refPanel |
Reference panel user can add. Default is GTEx which is provided internally. |
Value
directorObj - Object to be used for model fitting
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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