makeGenePlots: Create Gene Level Plots

In mccabes292/actor: A latent dirichlet model to Compare expressed isoform proportions TO a Reference panel

Description

To scale and flip contributions from a cross validation multi-omics analysis in order to be align with the contributions from the full analysis.

Usage

makeGenePlots(actorObj, isoData, geneList, tissueList = NULL,
  outFile = NULL, refPanel = NULL)

Arguments

actorObj	Output from actor model
isoData	Sample data to be included in heatmap. First column must be "gene_id" and second column "feature_id"
geneList	List of genes to plot.
tissueList	List of tissues to plot. Must be a subset of the tissues used in 'actorObj'. If left blank then the columns of 'likelihoodSum' from 'actorObj' will be used.
outFile	PDF file path to write gene plots to. Must end in .pdf.
refPanel	Reference panel user can add. Default is GTEx which is provided internally.

mccabes292/actor documentation built on March 1, 2020, 1:23 a.m.