Man pages for mccallm/spkTools
Methods for Spike-in Arrays
| affy | SpikeInExpressionSet of Affymetrix Spike-in Experiment Data |
| plotSpkBox | Boxplots of Fold Changes Calculated by spkBox |
| SpikeInExpressSet-class | Class to Contain and Describe High-Throughput Expression... |
| spkAccSD | Accuracy Standard Deviation |
| spkAll | Spike-in Functions Wrapper |
| spkAnova | Anova Model for Microarray Spike-in Data |
| spkBal | Quantify Microarry Spike-in Design Imbalance |
| spkBox | Fold Change Calculations |
| spkDensity | Spike-in Density Plot |
| spkGNN | Genes Needed to Detect N True Positives |
| spkMA | MA Plots |
| spkPair | Pairwise Comparisons for Spike-in Genes |
| spkPairNS | Pairwise Comparisons for Non-Spike-in Genes |
| spkPot | Probability of being in the Top |
| spkQuantile | Empirical Quantiles |
| spkSlope | Signal Detect Slope Plot |
| spkTools | Tools for Spike-in Data Analysis and Visualization |
| spkVar | Spike-in Variance |
| summarySpkBox | Summary of Fold Changes Calculated by spkBox |
