CellCODE-package | Cell type COmputational Differential Estimation |
cellCounts | Coulter Counts from Shen-Orr dataset |
cellPopC | Assign cell population using correlation |
cellPopF | Assign cell population using interaction F statistic |
cellPopT | Assign cell population using correlation |
combineTags | Combines cell type marker matricies |
cordist | Correlation based distance function. |
corplot | Plot correlation structure. |
DMAP | The Differentiation Map (DMAP) dataset. |
f.pvalue | F p-values |
fstats | F statistic |
Garvan | Garvan pure blood cell expression dataset. |
getAllSPVs | Get surrogate proportion variables (SPVs) |
GSE20300 | Gene Expression data for GSE20300 (Shen-Orr et al. kidney... |
GSE20300.grp | Clinical group labels for GSE20300 |
IRIS | Immune Response In Silico Dataset |
isRowmax | Is Row Max? |
lm.coef | Simple linear model fitting |
numAtFDR | Computes recall at a specified FDR |
randomizeExp | randomise expression |
resid | Quick residual |
simulateMixture | Simulate a mixture dataset |
svdIntGrp | SVD with group interaction |
svds | scaled SVD |
tagData | Finds cell type markers for a matrix of pure cell type... |
varExplained | Reports the fraction of variance explained by the model for... |
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