Man pages for mchikina/CellCODE
Cell type COmputational Differential Estimation.
| CellCODE-package | Cell type COmputational Differential Estimation |
| cellCounts | Coulter Counts from Shen-Orr dataset |
| cellPopC | Assign cell population using correlation |
| cellPopF | Assign cell population using interaction F statistic |
| cellPopT | Assign cell population using correlation |
| combineTags | Combines cell type marker matricies |
| cordist | Correlation based distance function. |
| corplot | Plot correlation structure. |
| DMAP | The Differentiation Map (DMAP) dataset. |
| f.pvalue | F p-values |
| fstats | F statistic |
| Garvan | Garvan pure blood cell expression dataset. |
| getAllSPVs | Get surrogate proportion variables (SPVs) |
| GSE20300 | Gene Expression data for GSE20300 (Shen-Orr et al. kidney... |
| GSE20300.grp | Clinical group labels for GSE20300 |
| IRIS | Immune Response In Silico Dataset |
| isRowmax | Is Row Max? |
| lm.coef | Simple linear model fitting |
| numAtFDR | Computes recall at a specified FDR |
| randomizeExp | randomise expression |
| resid | Quick residual |
| simulateMixture | Simulate a mixture dataset |
| svdIntGrp | SVD with group interaction |
| svds | scaled SVD |
| tagData | Finds cell type markers for a matrix of pure cell type... |
| varExplained | Reports the fraction of variance explained by the model for... |
