svdIntGrp: SVD with group interaction
In mchikina/CellCODE: Cell type COmputational Differential Estimation.
Description
Usage
Arguments
Value
Description
Finds the main axis of variation from a small submatrix of expression data while accounting for experimental group and group-eigenvector interactions effects.
Usage
1
svdIntGrp(dat, grp, cutoff = 0.3)
Arguments
dat
Expression matrix data with genes in rows and samples in columns
grp
A factor variable of experimental groups
cutoff
The fraction of genes to discard based on group effect
Value
A single eigenvector of the reduced expression matrix
mchikina/CellCODE documentation built on May 23, 2019, 1:13 p.m.
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Description Usage Arguments Value
Description
Finds the main axis of variation from a small submatrix of expression data while accounting for experimental group and group-eigenvector interactions effects.
Usage
1 | svdIntGrp(dat, grp, cutoff = 0.3)
|
Arguments
dat |
Expression matrix data with genes in rows and samples in columns |
grp |
A factor variable of experimental groups |
cutoff |
The fraction of genes to discard based on group effect |
Value
A single eigenvector of the reduced expression matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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