HighCovBam: HighCovBam
In mdelcorvo/rgumbo: A soup of useful R functions for genomics data analysis
HighCovBam R Documentation
HighCovBam
Description
Function to find high coverage regions in a bam file.
Usage
HighCovBam(bam,cutoff=NULL,width=500)
Arguments
bam
Bam file to analyze
cutoff
cutoff threshold for minimum coverage. If NULL, it will be used 0.9 quantile
width
size of windows. Default: 500 bases
Examples
bam='example.bam'
HighCovBam(bam,cutoff=100,width=500)
mdelcorvo/rgumbo documentation built on Jan. 3, 2025, 2:12 p.m.
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| HighCovBam | R Documentation |
HighCovBam
Description
Function to find high coverage regions in a bam file.
Usage
HighCovBam(bam,cutoff=NULL,width=500)
Arguments
bam |
Bam file to analyze |
cutoff |
cutoff threshold for minimum coverage. If NULL, it will be used 0.9 quantile |
width |
size of windows. Default: 500 bases |
Examples
bam='example.bam'
HighCovBam(bam,cutoff=100,width=500)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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