splitBed: splitBed

In mdelcorvo/rgumbo: A soup of useful R functions for genomics data analysis

splitBed

Description

Function to split bed files by chunks, by number of rows for each chromosome or by chromosome

Usage

splitBed(bed,chunks=NULL,n=NULL,chrOnly=F,prefix=T,writeBed=F,verbose=F)

Arguments

bed	data.frame in BED format with chromosome number, start and end position
chunks	number of chunks to split
n	number of lines for each chromosome
chrOnly	split only by chromosome
prefix	set to TRUE to add chr prefix if absent or FALSE to remove it if present
writeBed	write new bed files
verbose	give verbose output

Examples

splitBed(bed,n=100)

mdelcorvo/rgumbo documentation built on Jan. 3, 2025, 2:12 p.m.