LiftoverVcf: LiftoverVcf
In mdelcorvo/rgumbo: A soup of useful R functions for genomics data analysis
LiftoverVcf R Documentation
LiftoverVcf
Description
Function to lifts over a VCF file from one genome build to another, producing a properly headered, sorted VCF in one go.
Usage
LiftoverVcf(vcf,output,from="hg38",to="hg19")
Arguments
vcf
The input VCF/BCF file to be lifted overy
output
name of the output file
from
starting assembly
to
final assembly
Examples
LiftoverVcf(vcf,output,from="hg38",to="hg19")
mdelcorvo/rgumbo documentation built on Jan. 3, 2025, 2:12 p.m.
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| LiftoverVcf | R Documentation |
LiftoverVcf
Description
Function to lifts over a VCF file from one genome build to another, producing a properly headered, sorted VCF in one go.
Usage
LiftoverVcf(vcf,output,from="hg38",to="hg19")
Arguments
vcf |
The input VCF/BCF file to be lifted overy |
output |
name of the output file |
from |
starting assembly |
to |
final assembly |
Examples
LiftoverVcf(vcf,output,from="hg38",to="hg19")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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