Description Usage Arguments See Also
Lookup an NCIt Code in the NCIt Synonym Table. If the resultset has 0 rows, a scrape of the url path to the NCIt entry is done and any parsed response is saved to the Table.
1 2 3 4 5 6 7 8 9 | lookup_ncit_code(
ncit_code,
conn,
sleep_time = 5,
verbose = TRUE,
render_sql = TRUE,
encoding = "",
options = c("RECOVER", "NOERROR", "NOBLANKS")
)
|
ncit_code |
NCI Thesaurus Code to lookup. |
conn |
Postgres connection object. |
sleep_time |
Time in seconds for the system to sleep before each scrape with |
verbose |
When reading from a slow connection, this prints some output on every iteration so you know its working. |
encoding |
Specify a default encoding for the document. Unless otherwise specified XML documents are assumed to be in UTF-8 or UTF-16. If the document is not UTF-8/16, and lacks an explicit encoding directive, this allows you to supply a default. |
options |
Set parsing options for the libxml2 parser. Zero or more of
|
query
,appendTable
render
typewrite
html_nodes
,html_table
keep
bind
,mutate
,select_all
format_colnames
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