In meichendong/SCDC: Bulk RNA-seq deconvolution by scRNA-seq with multi-reference datasets

For more detailed data description and analysis, please refer to the SCDC manuscript.

Pancreatic islets datasets:

• scRNA-seq data from Segerstolpe et al. (2016)

• scRNA-seq data from Baron et al. (2017)

• scRNA-seq data from Segerstolpe et al. (2016) after clustering QC

• scRNA-seq data from Baron et al. (2017) after clustering QC

• scRNA-seq data from Xin et al. (2016) after clustering QC

• bulk RNA-seq data from Fadista et al. (2014)

Three Cell-line Mixture:

• scRNA-seq data
• bulk RNA-seq data

Mouse mammary gland datasets:

• scRNA-seq from Perou Lab after clustering QC
• scRNA-seq from Tabula Muris (2018) after clustering QC
• bulk RNA-seq data from Perou Lab -- 10X
• bulk RNA-seq data from Perou Lab -- Fresh-frozen

Raw and processed three-cell-line mixture data and mouse mammary gland data are available at GEO database: .

meichendong/SCDC documentation built on Jan. 26, 2023, 5:08 p.m.