checkSeqs: Internal function used to check the input foreground and...

In mengchen18/PTMotif: Detect PTM motifs

Description

Internal function used to check the input foreground and background sequence vectors

Usage

checkSeqs(fg.seqs, bg.seqs, option = c("extend", "trim", "error")[1],
  center = "STY")

Arguments

fg.seqs	a character vector of foreground sequences
bg.seqs	a character vector of background sequences
option	what should be done when some sequences in fg.seqs do not exist in the bg.seqs. acceptable options are "extend" - extend the background list; "trim" - trim the foreground list, i.e. remove the ones in foreground but not in background; "error" - stop and returns error message.
center	the amino acid centered at the sequences, sequences with other center AA would be removed from the list. To disable this function, set center = NULL.

Value

a list has two components: fg.seqs and bg.seqs

Author(s)

Chen Meng

mengchen18/PTMotif documentation built on May 29, 2019, 6:53 p.m.