mcgill.gq: Sample of a breast cancer gene expression dataset generated...

Description Usage Details Value Author(s) See Also Examples

Description

This is a breast cancer gene expression dataset generated at McGill University using the Affymetrix Gene ST platform. This is the validation dataset used in the A-PAM50 paper and in use in the examples of AIPS.

Usage

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Details

A sample of a breast cancer gene expression dataset currently generated at McGill University on the Affymetrix gene ST platform.

Value

D

A matrix of gene expression values, rows are genes and columns are samples

EntrezID

A vector of Entrez ids corresponding to genes (rows) of D

Author(s)

Eric R. Paquet ([email protected])

See Also

aips.models, apply.AIPS

Examples

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## Load a sample of the McGill dataset used in the paper
data(mcgill.gq)

## Dimensions of the gene expression matrix 
dim(mcgill.gq$D)

## Number of EntrezID
length(mcgill.gq$EntrezID)

meoyo/AIPS documentation built on May 22, 2017, 4:13 a.m.