Description Usage Arguments Value Examples
Heatmap of selected DE genes
The heatmap.sig.genes
is a function to draw the Heatmap of DE genes
given a FDR cut point obtained from the Meta-analysis.
1 | heatmap.sig.genes(result, meta.method, fdr.cut, color = "GR")
|
result |
is the output from MetaDE. |
meta.method |
is the meta-analysis method used in MetaDE. |
fdr.cut |
is the FDR cutoff used to select the DE genes. |
color |
is the color of the heatmap. |
a figure shows the standardized expression levels for the DE genes detected by meta analysis across studies/datasets.
1 2 3 4 5 6 7 8 9 | ## Not run:
meta.method <- 'AW'
fdr.cut <- 1e-7
pdf('heatmap.test.pdf')
heatmap.sig.genes(meta.res, meta.method=meta.method,
fdr.cut=fdr.cut,color="GR")
dev.off()
## End(Not run)
|
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