summary.meta: Function to summarize the meta-analysis results.

In metaOmic/MetaDE: MetaDE: Transcriptome meta-analysis for differentially expressed gene detection

Description

Function to summarize the results in tabular form The summary.meta is a function to summarize the meta-analysis results from the MetaDE output.

Usage

summary.meta(result, meta.method, resp.type)

Arguments

result	is the output from MetaDE
meta.method	is the meta-analysis method used in MetaDE
resp.type	is a character indicating the response type, must be one of "twoclass", "multiclass", "continuous" and "survival".

Value

a summary table including individual study statistics and pvalue, meta-analysis test statistics, pvalue, FDR, AW weights etc.

Examples

## Not run: 
meta.method <- 'AW'
resp.type <- "twoclass"
summary.result <- summary.meta(result=meta.res, 
                              meta.method = meta.method,
                              resp.type = resp.type)
posthoc.result <- posthoc.aw(result=meta.res)
summary.posthoc.result <- summary.meta(result=posthoc.result, 
                              meta.method = meta.method,
                              resp.type = resp.type)

## End(Not run)

metaOmic/MetaDE documentation built on May 22, 2019, 6:54 p.m.