new_instance_md: Get new instance metadata

In metamaden/recountmethylation.pipeline: Process DNAm array IDATs into database files

Get new instance metadata

Description

Generates the new metadata, including version and timestamp, for the 'recountmethylation' instance. This is called by rule 'new_instance_md'.

Usage

new_instance_md(
  version = "0.0.3",
  files.dname = "recount-methylation-files",
  md.dname = "metadata",
  sett.path = file.path("recountmethylation_server", "src", "settings.py")
)

Arguments

version	Version for instance. If FALSE, uses command line prompt.
files.dname	Path to directory to contain all instance metadata.
md.dname	Name of dir to contain the instance metadata.
sett.path	Path to the "settings.py" settings file containing the platform accession ID.

Value

NULL, produces the instance metadata file as side effect.

metamaden/recountmethylation.pipeline documentation built on Dec. 15, 2022, 2:25 a.m.