get_kinativ: Retrieve KiNativ assay data, percent inhibition or ic50.
In mforlin/LINCSanalytics:

Retrieve KiNativ assay data, percent inhibition or ic50.

1 2	get_kinativ(level = "perc_inhib", cells = "all", proteins = "all", perturbagens = "all", perturbagen_dose = "all")

`level`	string equal to "perc_inhib" or "ic50" for percent inhibition or ic50 data respectively (default "perc_inhib")
`proteins`	vector of strings with protein names (Default "all")
`perturbagens`	vector of strings with perturbagens IDs (Default "all")
`perturbagen_dose`	numeric vector with perturbagen doses (Default "all")

data frame containing entity selected and the associated percent inhibition or ic50 data

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get_kinativ(level="perc_inhib")
get_kinativ(level="ic50",proteins="BRAF")
get_kinativ(perturbagens = "10231-101-1")

mforlin/LINCSanalytics documentation built on May 20, 2019, 5:07 p.m.

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