get_mema: Retrieve MEMA assay data, for different staining sets.
In mforlin/LINCSanalytics:

Retrieve MEMA assay data, for different staining sets.

1 2	get_mema(ligands = "all", ecmps = "all", cells = "all", staining_set = 1, limits = 100)

`ligands`	vector of strings with ligand names (Default "all")
`ecmps`	vector of strings with extracellular matrix proteins (Default "all")
`cells`	vector of strings with cell names (Default "all")
`staining_set`	integer for the different staining sets (1 to 4 for staining set 1, 2, 3 or 2noH3 respectively)

data frame containing combination of perturbations and a set of measured features

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get_mema(staining_set=2)
get_mema(cells="PC3")
get_mema(staining_set=3, ligands="BMP3_P12645")

mforlin/LINCSanalytics documentation built on May 20, 2019, 5:07 p.m.

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