MDS_DIA: MDS_DIA

In mgerault/DIAgui: A shiny app for processing DIAnn output in proteomics

MDS_DIA

Description

Print MDS of processed data from DIAnn

Usage

MDS_DIA(
  data,
  transformation = c("log2", "none"),
  tit = "",
  data_type = c("intensity", "Top3", "iBAQ", "all"),
  colorspace = NULL
)

Arguments

data	Processed data from DIAnn (from iq processing or diann_matrix for example)
transformation	Which transformation do you want to apply (log2 or none)
tit	Title of your plot
data_type	The type of data you want to visualize; either 'intensity', 'Top3', 'iBAQ' or 'all'.
colorspace	A vector of colors of same length as the number of condition you have to plot. If NULL, will plot default ggplot2 colors.

Value

ggplot2 MDS graph

mgerault/DIAgui documentation built on Nov. 7, 2024, 12:12 a.m.