corrDIA: corrDIA

In mgerault/DIAgui: A shiny app for processing DIAnn output in proteomics

corrDIA

Description

Plot correlation plot from each fraction from processed data from DIAnn

Usage

corrDIA(
  data,
  transformation = c("none", "log2"),
  tit = "",
  data_type = c("intensity", "Top3", "iBAQ", "all"),
  gradient_color = c("#09009D", "#ffffff", "#BE0010"),
  plot_pairs = FALSE
)

Arguments

data	Processed data from DIAnn (from iq processing or diann_matrix for example)
transformation	Which transformation do you want to apply (log2 or none)
tit	Title of your plot
data_type	The type of data you want to visualize; either 'intensity', 'Top3', 'iBAQ' or 'all'.
gradient_color	Three colors for the printed gradient color on the correlation plot
plot_pairs	Plot pairwise correlation plot. If FALSE, will plot correlation matrix plot.

Value

ggplot2 correlation plot

mgerault/DIAgui documentation built on Nov. 7, 2024, 12:12 a.m.