heatmapDIA: heatmapDIA

In mgerault/DIAgui: A shiny app for processing DIAnn output in proteomics

heatmapDIA

Description

Print interactive heatmap of processed data from DIAnn

Usage

heatmapDIA(
  data,
  transformation = c("none", "log2", "z.score_protein", "z.score_fraction"),
  maxna = 0,
  print_val = TRUE,
  nm_id = NULL,
  data_type = c("intensity", "Top3", "iBAQ", "all"),
  gradient_color = c("#09009D", "#ffffff", "#BE0010"),
  static = FALSE
)

Arguments

data	Processed data from DIAnn (from iq processing or diann_matrix for example)
transformation	Which transformation do you want to apply (log2, z.score on proteins or on fractions, none)
maxna	How many NAs do you authorize per proteins
print_val	logical; do you want to print values on heatmpa ?
nm_id	The name of column that contains the IDs (if NULL, will take it automatically)
data_type	The type of data you want to visualize; either 'intensity', 'Top3', 'iBAQ' or 'all'.
gradient_color	Three colors for the printed gradient color on the heatmap
static	Logical to return a static plot (ggplot object) or an interactive one (plotly object)

Value

Plotly heatmap

mgerault/DIAgui documentation built on Nov. 7, 2024, 12:12 a.m.