getPValues: getPValues
In mheffe3/SCNVC: Generates Single Cell Networks that can be used in Cytoscape

Description Usage Arguments Value Author(s) Examples

View source: R/SCRNA.R

Calls the FindAllMarkers function from the Seurat package with a Seurat object and returns the PValues associated with that object

1	getPValues(SData)

SData

Seurat object containing single cell RNA seq data

Returns a data frame containing the pvalues for each gene in the data corresponding to the genes expression level

Matt Heffernan, University of Illinois at Chicago

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

PValues <- getPValues(SData)

## The function is currently defined as
function (SData) 
{
    PValues <- FindAllMarkers(SData, return.thresh = 1, logfc.threshold = 0)
    return(PValues)
  }