SendToCSV: SendToCSV

In mheffe3/SCNVC: Generates Single Cell Networks that can be used in Cytoscape

Description

Takes in a functional Module from scPPIN, a network dataframe, gene pvalues for expression, and the cluster number, and writes two csvs that can be used by Cytoscape for visualization of the network.

Usage

SendToCSV(functionalModule, network, Ps, C)

Arguments

functionalModule	A object containing the solution to the cluster network computed by scPPIN
network	A dataframe containing the network and edge weights for the cluster
Ps	A dataframe containg the PValues for each genes expression
C	The cluster number

Value

Does not return any varibale, but instead creates two csv files in the current working directory

Note

called by getDataFiles

Author(s)

Matt Heffernan, University of Illinois at Chicago

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

SendToCSV(FM, network, Ps, 0)

## The function is currently defined as
function (functionalModule, network, Ps, C) 
{
    filename = paste("UterusNetwork", C, ".csv", sep = "")
    writeCSV(network, filename, row.names = FALSE)
    filename = paste("UterusTableNS", C, ".csv", sep = "")
    table2 <- as_data_frame(functionalModule, what = c("vertices"))
    writeCSV(table2, filename, row.names = FALSE)
  }

mheffe3/SCNVC documentation built on Dec. 21, 2021, 5:52 p.m.