getClusterList: getCluterList
In mheffe3/SCNVC: Generates Single Cell Networks that can be used in Cytoscape

Description Usage Arguments Value Note Author(s) Examples

View source: R/SCRNA.R

Gets a list of all the clusters in the seurat object passed and returns it

1	getClusterList(Data, PValues)

`Data`	Seurat object containing the clusters
`PValues`	PValues returned from getPValues

A list containing the clusters in the Seurat object

Called by getDataFiles and getCyGraphs

Matt Heffernan, University of Illinois at Chicago

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

getClusterList(SData, Ps)

## The function is currently defined as
function (Data, PValues) 
{
    nClusters = nlevels(seqwell@meta.data$seurat_clusters)
    ClusterList <- list()
    i = 0
    while (i < nClusters) {
        ClusterList[[paste("C", as.character(i), sep = "")]] = PValues[PValues$cluster == 
            i, ]
        i = i + 1
    }
    return(ClusterList)
  }