R/cdf.size.prop.R

In mhweber/spsurvey: Spatial Survey Design and Analysis

################################################################################
# Function: cdf.size.prop
# Programmer: Tom Kincaid
# Date: July 12, 2000
# Last Revised: June 3, 2008
#
#' Size-weighted Cumulative Distribution Function Estimate
#'
#' This function calculates an estimate of the size-weighted cumulative
#' distribution function (CDF) for the proportion of a finite resource. The set
#' of values at which the CDF is estimated is supplied to the function. The
#' Horvitz-Thompson ratio estimator, i.e., the ratio of two Horvitz-Thompson
#' estimators, is used to calculate the estimate.  The numerator of the ratio
#' estimates the size-weighted total of the resource equal to or less than a
#' specified value.  The denominator of the ratio estimates the sum of the
#' size-weights for the resource.  The function can accomodate single-stage and
#' two-stage samples.
#'
#' @param z Vector of the response value for each site.
#'
#' @param wgt Vector of the final adjusted weight (inverse of the sample
#'   inclusion probability) for each site, which is either the weight for a
#'   single- stage sample or the stage two weight for a two-stage sample.
#'
#' @param swgt Vector of the size-weight for each site, which is the stage two
#'   size-weight for a two-stage sample.
#'
#' @param val Vector of the set of values at which the CDF is estimated.
#'
#' @param cluster.ind Lloical value that indicates whether the sample is a
#'   two- stage sample, where TRUE = a two-stage sample and FALSE = not a
#'   two-stage sample.
#'
#' @param cluster Vector of the stage one sampling unit (primary sampling unit
#'   or cluster) code for each site.
#'
#' @param wgt1 Vector of the final adjusted stage one weight for each site.
#'
#' @param swgt1 Vector of the stage one size-weight for each site.
#'
#' @return The size-weighted CDF estimate.
#'
#' @author Tom Kincaid \email{Kincaid.Tom@epa.gov}
#'
#' @keywords survey
#'
#' @export
################################################################################

cdf.size.prop <- function(z, wgt, val, cluster.ind, cluster, wgt1, swgt,
   swgt1) {


# Calculate additional required values

   m <- length(val)
   wgt <- wgt*swgt
   if(cluster.ind) {
      cluster <- factor(cluster)
      ncluster <- length(levels(cluster))
      z.lst <- split(z, cluster)
      wgt2.lst <- split(wgt, cluster)
      wgt1 <- wgt1*swgt1
      wgt1.u <- as.vector(tapply(wgt1, cluster, unique))
   }

# Calculate the cdf estimate

   cdf <- numeric(m)
   if(cluster.ind) {
      for(i in 1:m) {
         temp <- numeric(ncluster)
         for(j in 1:ncluster) {
            temp[j] <- sum(ifelse(z.lst[[j]] <= val[i], wgt2.lst[[j]], 0))
         }
         cdf[i] <- sum(wgt1.u*temp)
      }
   } else {
      for(i in 1:m) {
         cdf[i] <- sum(ifelse(z <= val[i], wgt, 0))
      }
   }

   if(cluster.ind)
      cdf <- cdf/sum(wgt1*wgt)
   else
      cdf <- cdf/sum(wgt)

# Return the estimate

   cdf
}