Germination.Analysis: Germination.Analysis

In micdimu/ecoseeds: Seed ecology - germination and morphometric analysis

Description

The function analyses germination tests automatically

Usage

Germination.Analysis(germ_dyn, Nv.seed=NULL, cv=1.5, n.seed=20)

Arguments

germ_dyn	germination dynamic matrix, row=tests, col=days, frist column=type of test
n.seed	number of seeds for each petri
Nv.seed	Number of not empty seeds, must be a vector or the column number where these values are located
cv	Weibull curve shape parameter

Value

test_type	types of tests
Dyn_perc_germ_SP	Germination percentage for each day - each petri
M_SP	Final germination percentage each petri
Z_SP	Germination delay each petri
T50_SP	T50 each petri
Dyn_perc_germ	Germination percentage for each day - each test
M	Final germination percentage each test
M_SD	Standard deviation of final germination percentage each test
Z	Germination delay each test
Z_SD	Standard deviation of Germination delay for each test
T50	T50 each test
T50_SD	Standard deviation of T50 for each test
k	Relative germination rate
y	germination percentage from weibull function for each days)

Author(s)

Michele Di Musciano ([e-mail])

Examples

## load file and run the function

file_germ<-read.csv("your_germination_file.csv", sep=";", header=T)

Germination.Analysis(file_germ, Nv.seed = NULL, n.seed=10, cv=1.5)

micdimu/ecoseeds documentation built on Aug. 10, 2020, 10:34 p.m.