Species.T50.comp: Species.T50.comp

In micdimu/ecoseeds: Seed ecology - germination and morphometric analysis

Description

Compare T50 percentage for two species. The results are plotted using boxplots, different letters indicate significant differences among testS and species. The figure is automatically saved in 16:9 at 300 dpi.

Usage

Species.T50.comp(Germ.Analysis.exp_sp1, Germ.Analysis.exp_sp2, sp_name=NULL , colour="yes", Test.int=NULL)

Arguments

Germination.Analysis.output_sp1	output from Germination.Analysis function for species 1
Germination.Analysis.output_sp2	output from Germination.Analysis function for species 2
colour	can be "yes" (coloured by test.type) or "no" (B/W output) or a vector that specify the groups of tests (length of vector must be equal to n° of petri)
Test.int	character vector where are indicated the types of tests that would be compared

Value

Anova	anova results, summary(aov)
Tukey	Post-hoc Tukey test output
Test	Test compared
T50	T50 percentage for each test analysed
Boxplot_T50	ggplot output

Author(s)

Michele Di Musciano ([e-mail])

Examples

file_germ_sp1<-read.csv("your_germination_file_sp1.csv", sep=";", header=T)
file_germ_sp2<-read.csv("your_germination_file_sp2.csv", sep=";", header=T)

Germination.Analysis.output_sp1<-Germination.Analysis(file_germ, Nv.seed = NULL, n.seed=20, cv=1.5)
Germination.Analysis.output_sp2<-Germination.Analysis(file_germ, Nv.seed = NULL, n.seed=20, cv=1.5)

Species.T50.comp(Germination.Analysis.output_sp1, Germination.Analysis.output_sp2, colour = "yes")

micdimu/ecoseeds documentation built on Aug. 10, 2020, 10:34 p.m.