read_hdx: Read HDX-MS data file

In michbur/HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Read HDX-MS data file

Description

Imports data from a HDX-MS file and validates its content.

Usage

read_hdx(filename)

Arguments

filename

a file supplied by the user. Formats allowed: .csv, .xlsx and .xls.

Details

First version accepts files produced by DynamX 3.0 and 2.0 in 'cluster data' format. The function checks if all necessary columns are provided in correct format. The file must include at least two repetitions of the measurement for the uncertainty to be calculated.

Value

dat - a data.frame with validated content.

See Also

calculate_kinetics calculate_state_deuteration plot_coverage plot_position_frequency prepare_dataset quality_control reconstruct_sequence

Examples

# read example data
head(read_hdx(system.file(package = "HaDeX", 
                     "HaDeX/data/KD_180110_CD160_HVEM.csv")))

michbur/HaDeX documentation built on March 29, 2022, 5:46 p.m.