reconstruct_sequence: Reconstruct protein sequence

In michbur/HaDeX: Analysis and Visualisation of Hydrogen/Deuterium Exchange Mass Spectrometry Data

Reconstruct protein sequence

Description

Reconstructs protein sequence from supplied file.

Usage

reconstruct_sequence(dat, protein = dat[["Protein"]][1])

Arguments

dat	data read by read_hdx
protein	the protein of which the structure is to be reconstructed

Details

The function reconstructs protein sequence from supplied experimental data. If a position is not covered, x is shown. First version doesn't support manual sequence length correction.

Value

reconstructed sequence - character object.

See Also

read_hdx

Examples

dat <- read_hdx(system.file(package = "HaDeX", "HaDeX/data/KD_180110_CD160_HVEM.csv"))
reconstruct_sequence(dat)

michbur/HaDeX documentation built on March 29, 2022, 5:46 p.m.