API for michbur/biogram
N-Gram Analysis of Biological Sequences
| Global functions | |
|---|---|
| aaprop | Man page |
| add_1grams | Man page Source code |
| add_1grams_positioned | Source code |
| as.data.frame.feature_test | Man page Source code |
| binarize | Man page Source code |
| biogram | Man page |
| biogram-package | Man page |
| build_and_test | Source code |
| calc_criterion | Man page Source code |
| calc_cs | Man page Source code |
| calc_ed | Man page Source code |
| calc_ed_single | Source code |
| calc_ig | Man page Source code |
| calc_kl | Man page Source code |
| calc_max_grams | Source code |
| calc_occurences | Source code |
| calc_pi | Man page Source code |
| calc_pi_hidden | Source code |
| calc_si | Man page Source code |
| calc_si_hidden | Source code |
| check_criterion | Man page Source code |
| cluster_reg_exp | Man page Source code |
| code_ngrams | Man page Source code |
| construct_ngrams | Man page Source code |
| count_df | Source code |
| count_multigrams | Man page Source code |
| count_ngrams | Man page Source code |
| count_ngrams_helper | Source code |
| count_single_positioned_ngram | Source code |
| count_single_unpositioned_ngram | Source code |
| count_specified | Man page Source code |
| count_total | Man page Source code |
| create_criterion_distribution | Source code |
| create_encoding | Man page Source code |
| create_feature_target | Man page Source code |
| create_feature_test | Source code |
| create_merges | Source code |
| create_ngrams | Man page Source code |
| create_region | Source code |
| criterion_distribution | Man page |
| cut.feature_test | Man page Source code |
| decode_ngrams | Man page Source code |
| decode_single_ngrams | Source code |
| degenerate | Man page Source code |
| degenerate_ngrams | Man page Source code |
| distr_crit | Man page Source code |
| encoding2df | Man page Source code |
| encoding2matrix | Source code |
| entlog | Source code |
| fast_crosstable | Man page Source code |
| feature_test | Man page |
| full2simple | Man page Source code |
| gap_ngrams | Man page Source code |
| gap_single_ngram | Source code |
| generate_sequence | Man page Source code |
| generate_single_region | Man page Source code |
| generate_single_unigram | Man page Source code |
| generate_unigrams | Man page Source code |
| get_ngrams_ind | Man page Source code |
| human_cleave | Man page |
| is_ngram | Man page Source code |
| join_reg_exp | Source code |
| l2n | Man page Source code |
| lengths_ngrams | Man page Source code |
| list2matrix | Man page Source code |
| n2l | Man page Source code |
| ngrams2df | Man page Source code |
| plot.criterion_distribution | Man page Source code |
| position_ngrams | Man page Source code |
| print.feature_test | Man page Source code |
| read_fasta | Man page Source code |
| read_txt | Man page Source code |
| reg_exp_df | Source code |
| regenerate | Man page Source code |
| regional_param | Man page |
| return_elements | Source code |
| seq2ngrams | Man page Source code |
| seq2ngrams_helper | Source code |
| simple2full | Man page Source code |
| summary.feature_test | Man page Source code |
| table_ngrams | Man page Source code |
| test_features | Man page Source code |
| validate_encoding | Man page Source code |
| write_encoding | Man page Source code |
| write_fasta | Man page Source code |
