degenerate_ngrams: Degenerate n-grams
In michbur/biogram: N-Gram Analysis of Biological Sequences
degenerate_ngrams R Documentation
Degenerate n-grams
Description
'Degenerates' n-grams by aggregating amino acid or nucleotide elements
into bigger groups.
Usage
degenerate_ngrams(x, element_groups, binarize = FALSE)
Arguments
x
a simple_triplet_matrix or matrix of n-grams.
element_groups
encoding of elements: list of groups to which elements
of n-grams should be aggregated. Must have unique names.
binarize
logical indicating if n-grams should be binarized
Value
Depending on the x{} a simple_triplet_matrix
or matrix of degenerated n-grams.
michbur/biogram documentation built on Feb. 4, 2024, 6:38 p.m.
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| degenerate_ngrams | R Documentation |
Degenerate n-grams
Description
'Degenerates' n-grams by aggregating amino acid or nucleotide elements into bigger groups.
Usage
degenerate_ngrams(x, element_groups, binarize = FALSE)
Arguments
x |
a |
element_groups |
encoding of elements: list of groups to which elements of n-grams should be aggregated. Must have unique names. |
binarize |
logical indicating if n-grams should be binarized |
Value
Depending on the x{} a simple_triplet_matrix
or matrix of degenerated n-grams.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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