makeTreeSEFromPhyloseq: Coerce a 'phyloseq' object to a 'TreeSummarizedExperiment'

In microbiome/mia: Microbiome analysis

Coerce a phyloseq object to a TreeSummarizedExperiment

Description

makeTreeSEFromPhyloseq converts phyloseq objects into TreeSummarizedExperiment objects.

Usage

makeTreeSEFromPhyloseq(obj)

makeTreeSummarizedExperimentFromPhyloseq(obj)

## S4 method for signature 'ANY'
makeTreeSummarizedExperimentFromPhyloseq(obj)

Arguments

obj	a phyloseq object

Details

All data stored in a phyloseq object is transferred.

Value

An object of class TreeSummarizedExperiment

See Also

makeTreeSEFromBiom makeTreeSEFromDADA2 importQIIME2 importMothur

Examples

if (requireNamespace("phyloseq")) {
    data(GlobalPatterns, package="phyloseq")
    makeTreeSEFromPhyloseq(GlobalPatterns)
    data(enterotype, package="phyloseq")
    makeTreeSEFromPhyloseq(enterotype)
    data(esophagus, package="phyloseq")
    makeTreeSEFromPhyloseq(esophagus)
}

microbiome/mia documentation built on April 27, 2024, 4:04 a.m.