microbiota/amplicon: Statistics and visualization for amplicon data

A basic statistics and plotting pipeline for amplicon data. 1. Alpha boxplot with LSD.test / anova; 2. Alpha rarefraction curve in samples and groups with standard error; 3. PCoA plot with confidence ellipse and Adonis p-value; 4. Constrained PCoA / CCA with variant, p-value and confidence ellipse; 5. Taxonomy stackplot in group and sample. 0.1.1 add beta_cpcoa_dis.R support constrained distance matrix

Getting started

Package details

AuthorYong-Xin Liu
MaintainerYong-Xin Liu <[email protected]>
LicenseGPL-2
Version0.1.1
URL https://github.com/microbiota http://bailab.genetics.ac.cn http://www.ehbio.com/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("microbiota/amplicon")
microbiota/amplicon documentation built on Jan. 8, 2020, 11:30 a.m.