Files in microbiota/amplicon
Statistics and visualization for microbiome data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BetaDiv.R
R/MicroTest.R
R/alpha_barplot.R
R/alpha_boxplot.R
R/alpha_rare_all.R
R/alpha_rare_curve.R
R/alpha_sample_rare.R
R/beta_cpcoa.R
R/beta_cpcoa_dis.R
R/beta_pcoa.R
R/beta_pcoa_stat.R
R/beta_rda-cca.R
R/compare.R
R/format2lefse.R
R/format2lefse2.R
R/format2maptree.R
R/format2stamp.R
R/pairMicroTest.R
R/tax_circlize.R
R/tax_maptree.R
R/tax_stack_cluster.R
R/tax_stackplot.R
R/tax_wordcloud.R
README.md
amplicon.Rproj
beta_pcoa_stat.txt
data/alpha_div.rda
data/alpha_rare.rda
data/beta_bray_curtis.rda
data/beta_unifrac.rda
data/env.rda
data/metadata.rda
data/otutab.rda
data/otutab_rare.rda
data/tax_phylum.rda
data/taxonomy.rda
data/tree.rda
man/BetaDiv.Rd
man/MicroTest.Rd
man/RDA_CCA.Rd
man/alpha_barplot.Rd
man/alpha_boxplot.Rd
man/alpha_rare_all.Rd
man/alpha_rare_curve.Rd
man/alpha_sample_rare.Rd
man/beta_cpcoa.Rd
man/beta_cpcoa_dis.Rd
man/beta_pcoa.Rd
man/beta_pcoa_stat.Rd
man/compare.Rd
man/format2lefse.Rd
man/format2lefse2.Rd
man/format2maptree.Rd
man/format2stamp.Rd
man/pairMicroTest.Rd
man/tax_circlize.Rd
man/tax_maptree.Rd
man/tax_stack_clust.Rd
man/tax_stackplot.Rd
man/tax_wordcloud.Rd
vignettes/.gitignore
vignettes/alpha_boxplot.Rmd
vignettes/alpha_boxplot_TukeyHSD.txt
vignettes/alpha_div.txt
vignettes/alpha_rare.txt
vignettes/amplicon-tutorial.Rmd
vignettes/beta_bray_curtis.txt
vignettes/beta_unifrac.txt
vignettes/bray_LDA_data.txt
vignettes/bray_LDA_stat.txt
vignettes/compare.txt
vignettes/env.txt
vignettes/metadata.txt
vignettes/otus.tree
vignettes/otutab.txt
vignettes/otutab_rare.txt
vignettes/tax_phylum.txt
vignettes/taxonomy.txt
vignettes/vegan.txt
