Man pages for microbiota/amplicon
Statistics and visualization for amplicon data

alpha_boxplotPlotting alpha diversity boxplot for each group with anova...
alpha_rare_curvePlotting rarefracation curve for each group with anova...
beta_cpcoaPlotting beta diversity scatter plot of Constrained PCoA
beta_cpcoa_disPlotting beta diversity scatter plot of Constrained PCoA
beta_pcoaPlotting beta diversity scatter plot
beta_pcoa_statPlotting beta diversity scatter plot
compareDifference comparison
format2lefseFormat otutab, metadata and taxonomy into LEfSe format
format2lefse2Format otutab, metadata and taxonomy into LEfSe format with...
format2maptreeFormat feature table and taxonomy into maptree data
format2stampFormat otutab and taxonomy into each level for STAMP
tax_circlizePlotting circlize of taxonomy for groups or samples
tax_maptreePlotting maptree of taxonomy
tax_stackplotPlotting stackplot of taxonomy for groups or samples
microbiota/amplicon documentation built on Jan. 8, 2020, 11:30 a.m.