plotRelPos: Plot relative position bias over samples

In mikelove/alpine: alpine

Plot relative position bias over samples

Description

Plots the smooth curves of log fragment rate over relative position.

Usage

plotRelPos(fitpar, model, col, lty, ylim)

Arguments

fitpar	a list of the output of fitBiasModels over samples
model	the name of one of the models
col	a vector of colors
lty	a vector of line types
ylim	the y limits for the plot

Value

plot

Examples

# fitpar was fit using identical code
# as found in the vignette, except with
# 25 genes, and with fragment size in 80-350 bp
data(preprocessedData)
perf <- rep(1:2, each=2)
plotRelPos(fitpar, "all", col=perf)

mikelove/alpine documentation built on June 9, 2024, 11:37 a.m.