API for mikelove/fishpond
Fishpond: downstream methods and tools for expression data
| Global functions | |
|---|---|
| .say | Source code |
| addStatsFromCSV | Man page Source code |
| alevinEC | Man page Source code |
| boxplot2 | Source code |
| checkPair | Source code |
| computeInfRV | Man page Source code |
| deswish | Man page Source code |
| estimatePi0 | Source code |
| fishpond | Man page |
| fishpond-package | Man page |
| getCorStat | Source code |
| getDeltaLFC | Source code |
| getInfReps | Source code |
| getInterxPairStat | Source code |
| getLog2FC | Source code |
| getLog2FCNumX | Source code |
| getLog2FCPair | Source code |
| getPairPerms | Source code |
| getPerms | Source code |
| getPseudoPair | Source code |
| getSamStat | Source code |
| getSignedRank | Source code |
| getTrace | Man page Source code |
| getZscore | Source code |
| grSelect | Source code |
| importAllelicCounts | Man page Source code |
| infRepError | Source code |
| isoformProportions | Man page Source code |
| joinNearbyTss | Source code |
| labelKeep | Man page Source code |
| loadFry | Man page Source code |
| load_fry_raw | Source code |
| makeInfReps | Man page Source code |
| makeIsoProp | Source code |
| makeLocFDR | Source code |
| makeQvalue | Source code |
| makeSamrObj | Source code |
| makeSimSwishData | Man page Source code |
| makeTx2Tss | Man page Source code |
| medianOverMean | Source code |
| miniSwish | Man page Source code |
| my_as_dgcmatrix | Source code |
| permsNote | Source code |
| plotAllelicGene | Man page Source code |
| plotAllelicHeatmap | Man page Source code |
| plotInfReps | Man page Source code |
| plotMASwish | Man page Source code |
| postprocess | Source code |
| randomSamplesToRemove | Source code |
| readBFH | Source code |
| readEq | Source code |
| readExampleFryData | Source code |
| salmonEC | Man page Source code |
| scaleInfReps | Man page Source code |
| splitSwish | Man page Source code |
| sv.cbind | Source code |
| swish | Man page Source code |
| swishCor | Source code |
| swishCorPair | Source code |
| swishInterx | Source code |
| swishInterxPair | Source code |
| swishPair | Source code |
| swishStrat | Source code |
| swishTwoGroup | Source code |
| writeExampleFryDat | Source code |
