Files in mikelove/fishpond
Fishpond: downstream methods and tools for expression data
.github/workflows/check-bioc.yml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
NAMESPACE
NEWS.md
R/alevin-EC.R
R/alevin-loadFry.R
R/correlation.R
R/deswish.R
R/fishpond.R
R/helper-allelic.R
R/helper-compress.R
R/helper-isoform.R
R/helper.R
R/interaction.R
R/pair.R
R/plots.R
R/salmon-EC.R
R/stratified.R
R/swish.R
README.md
fishpond.Rproj
inst/CITATION
inst/extdata/Snakefile
inst/extdata/alevin/example-quants/fry-usa-basic/alevin/quants_mat.mtx
inst/extdata/alevin/example-quants/fry-usa-basic/alevin/quants_mat_cols.txt
inst/extdata/alevin/example-quants/fry-usa-basic/alevin/quants_mat_rows.txt
inst/extdata/alevin/example-quants/fry-usa-basic/example-dat.csv
inst/extdata/alevin/example-quants/fry-usa-basic/meta_info.json
inst/extdata/animation-code.R
inst/script/timing.R
man/addStatsFromCSV.Rd
man/alevinEC.Rd
man/computeInfRV.Rd
man/deswish.Rd
man/figures/fishpond.png
man/figures/plotInfReps.png
man/figures/swish.gif
man/fishpond-package.Rd
man/getTrace.Rd
man/importAllelicCounts.Rd
man/isoformProportions.Rd
man/labelKeep.Rd
man/loadFry.Rd
man/makeInfReps.Rd
man/makeSimSwishData.Rd
man/makeTx2Tss.Rd
man/miniSwish.Rd
man/plotAllelicGene.Rd
man/plotAllelicHeatmap.Rd
man/plotInfReps.Rd
man/plotMASwish.Rd
man/salmonEC.Rd
man/scaleInfReps.Rd
man/splitSwish.Rd
man/swish.Rd
pkgdown/_pkgdown.yml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
tests/testthat.R
tests/testthat/test_alevinEC.R
tests/testthat/test_allelic.R
tests/testthat/test_compress.R
tests/testthat/test_correlation.R
tests/testthat/test_interaction.R
tests/testthat/test_loadFry.R
tests/testthat/test_salmonEC.R
tests/testthat/test_swish.R
vignettes/allelic.Rmd
vignettes/images/SEESAW.png
vignettes/library.bib
vignettes/swish.Rmd
