Man pages for mil2041/CNCDriver
CNCDriver

addReplicationTimingSignalAdd replication timing signal value
addTriNucleotideDistributionAdd trinucleotide distribution annotations
calculatePvalueWithMutCategoryDistributionMatched7calculate Pvalue With Mut CategoryDistribution Matched
extractElementMutationsExtract overlapping mutations from element annotation bed...
getCDSPvalueRun CNCDriver coding region (CDS) p-value calculation
getEnhancerUnitPvalueRun CNCDriver enhancer unit p-value calculation
getLincRNAPvalueRun CNCDriver lincRNA p-value calculation
getPromoterPvalueRun CNCDriver promoter p-value calculation
makeElementReplicationTimingMake replication timing signal value for each regulatory...
mergeVariantPositionmergeVariantPosition
parseMOTIFBRParse MOTIFBR annotations from FunSeq2
parseMOTIFGParse MOTIFBR annotations from FunSeq2
parseNCENCParse NCENC annotations from FunSeq2
parsePosVariantByTriMutContextWithAnnotation5Parse Pos Variant By TriMutContext With Annotation
parsePosVariantByTriMutContextWithAnnotationCDSParse Pos Variant By TriMutContext With Annotation for...
mil2041/CNCDriver documentation built on April 11, 2018, 4:25 a.m.