Man pages for mil2041/CNCDriver
CNCDriver

addReplicationTimingSignaladdReplicationTimingSignal
addTriNucleotideDistributionAdd trinucleotide distribution annotations
calculatePvalueWithMutCategoryDistributionMatched7calculate Pvalue With Mut CategoryDistribution Matched
extractElementMutationsExtract overlapping mutations from element annotation bed...
getCDSpvalueRun CNCDriver cds p-value calculation
getEnhancerUnitPvalueRun CNCDriver lincRNA p-value calculation
getLincRNAPvalueRun CNCDriver lincRNA p-value calculation
getPromoterPvalueRun CNCDriver promoter p-value calculation
mergeVariantPositionmergeVariantPosition
mergeVariantPositionSimpleCalculate recurrence number
parseMOTIFBRParse MOTIFBR annotations from FunSeq2
parseMOTIFGParse MOTIFBR annotations from FunSeq2
parseNCENCParse NCENC annotations from FunSeq2
parsePosVariantByTriMutContextWithAnnotation5Parse Pos Variant By TriMutContext With Annotation
preProcessVCFParse Funseq2 VCF file
mil2041/CNCDriver documentation built on Nov. 19, 2017, 12:24 a.m.