Man pages for mil2041/CNCDriver
CNCDriver

addReplicationTimingSignalAdd replication timing signal value
addTriNucleotideDistributionAdd trinucleotide distribution annotations
calculatePvalueWithMutCategoryDistributionMatched7calculate Pvalue With Mut CategoryDistribution Matched
extractElementMutationsExtract overlapping mutations from element annotation bed...
get3utrPvalueRun CNCDriver 3'UTR p-value calculation
get3utrPvalueWithPreFilterRun CNCDriver 3'UTR p-value calculation with mutation...
get5utrPvalueRun CNCDriver 5'UTR p-value calculation
get5utrPvalueWithPreFilterRun CNCDriver 5'UTR p-value calculation with mutation...
getCDSPvalueRun CNCDriver coding region (CDS) p-value calculation
getCDSPvalueWithPreFilterRun CNCDriver coding region (CDS) p-value calculation with...
getEnhancerUnitPvalueRun CNCDriver enhancer unit p-value calculation
getEnhancerUnitPvalueWithPreFilterRun CNCDriver enhancer unit p-value calculation
getLincRNAPvalueRun CNCDriver lincRNA p-value calculation
getLincRNAPvalueWithPreFilterRun CNCDriver lincRNA p-value calculation
getPromoterPvalueRun CNCDriver promoter p-value calculation
getPromoterPvalueWithPreFilterRun CNCDriver promoter p-value calculation with mutation...
makeElementReplicationTimingMake replication timing signal value for each regulatory...
mergeVariantPositionmergeVariantPosition
mergeVariantPositionClusterEnhancerUnitV2mergeVariantPositionClusterEnhancerUnitV2
mergeVariantPositionClusterV2mergeVariantPositionClusterV2
mergeVariantPositionElementClusterV2mergeVariantPositionElementClusterV2
parseMOTIFBRParse MOTIFBR annotations from FunSeq2
parseMOTIFGParse MOTIFBR annotations from FunSeq2
parseNCENCParse NCENC annotations from FunSeq2
parsePosVariantByTriMutContextWithAnnotation5Parse Pos Variant By TriMutContext With Annotation
parsePosVariantByTriMutContextWithAnnotationCDSParse Pos Variant By TriMutContext With Annotation for...
mil2041/CNCDriver documentation built on May 26, 2018, 4:18 p.m.